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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20635704_20636666_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20635704 - 20636666
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCCCATTTAATT
Flanking Amino Acid:
NLMTRIVYTLVDWFPVVRDL
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.8
78.1
30
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
58
0.33
1.5
69.74
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014572
20635501 - 20646198
10698