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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20636785_20638294_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20636785 - 20638294
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTGCATGTAATG
Flanking Amino Acid:
ILYPGDLSVEEVFQKEHESN
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
83.5
0.75
0.9
80.5
36.7
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
42
-0.7
2.1
44.85
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014572
20635501 - 20646198
10698