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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20638553_20639199_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20638553 - 20639199
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTCTCCTTATTT
Flanking Amino Acid:
YHSENPRRPEVGDLRVSFFY
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
81.3
0.71
0.8
77.1
30.4
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
74.7
0.85
1.5
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014572
20635501 - 20646198
10698