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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20639545_20641238_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20639545 - 20641238
Intron Length:
1694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AATTCTGGAACT
Flanking Amino Acid:
FDREIGHKNPSAMAVESFTA
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
80.3
0.68
0.8
72.8
37.5
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
53.5
0.19
2.1
76.52
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014572
20635501 - 20646198
10698