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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20641309_20642722_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20641309 - 20642722
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TCATTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TCTGTCTTATCA
Flanking Amino Acid:
EIKKETKYTYNTEWKSEVVN
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1
69.1
38.5
Major BPS
79
0.72
1
80.3
31.7
Major PPT
86.3
0.82
0.7
84.8
29.8
Minor 5ss
41.8
-0.9
2.8
54.8
43.5
Minor BPS
60.4
0.32
1.7
70.18
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014572
20635501 - 20646198
10698