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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20642773_20643519_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20642773 - 20643519
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCAAT
U12 Branch Point Sequence:
AGACCATGAAAC
Flanking Amino Acid:
MYQWVEYEDSREYEENGEIK
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
55.3
0.13
1.2
62.7
32.2
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
45.3
-0.3
1.7
52.58
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014572
20635501 - 20646198
10698