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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20645627_20646186_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20645627 - 20646186
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTATCTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTATCTCCAACA
Flanking Amino Acid:
MSRNFSDTGSKKEH
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.3
78.8
38.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75
0.56
0.9
70.7
34.6
Minor 5ss
45.2
-0.5
2.8
57.5
40.5
Minor BPS
57.2
0.22
1.9
73.54
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013959
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014572
20635501 - 20646198
10698