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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20646601_20648632_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20646601 - 20648632
Intron Length:
2032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCTGG
5'SS Class:
major
3'SS Sequence:
TCCTGTATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTTCTCTGAACT
Flanking Amino Acid:
MSYCRQEGKDKIIFVTK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.9
44.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
69.1
0.43
1
64.6
40.3
Minor 5ss
36.7
-1.5
3.2
46.9
48.5
Minor BPS
74.8
0.86
1.3
90.4
32.6

Associated Gene:

Gene:
CHCHD4
Ensembl Gene ID:
ENSAPLG00000021688
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019746
20646579 - 20654203
7625