About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2064694_2067690_F

Intron Information:

Intron Rank:
138392
Intron Class:
major
Intron Phase:
Intron Coordinates:
2064694 - 2067690
Intron Length:
2997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATCAC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
TTTCTTCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
67.4
37.9
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
82.8
0.74
0.9
80.1
32
Minor 5ss
34
-1.8
3
40.9
39.8
Minor BPS
55.8
0.18
1.6
72.08
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024484
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040123
2064108 - 2073624
9517