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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20648732_20653907_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20648732 - 20653907
Intron Length:
5176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GAGCATTTAACT
Flanking Amino Acid:
DDPDDPYEEQGLILPNGDIN
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.8
38.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
85.3
0.79
0.9
84.6
36
Minor 5ss
32.9
-2
2.7
43.5
43.5
Minor BPS
57.5
0.31
1.5
68.71
41.6

Associated Gene:

Gene:
CHCHD4
Ensembl Gene ID:
ENSAPLG00000021688
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019746
20646579 - 20654203
7625