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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20665154_20667027_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20665154 - 20667027
Intron Length:
1874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTAAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTCCTTTAAAC
Flanking Amino Acid:
RGCTCPILNPGTDYLIAGQE
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
65.1
0.34
1
60.2
39.5
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
68.3
0.55
1.4
72.99
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013935
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014519
20665017 - 20712332
47316