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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20668356_20669374_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20668356 - 20669374
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCCC
5'SS Class:
major
3'SS Sequence:
GTTTTCCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TCTTCTCCAACA
Flanking Amino Acid:
EQGFSALRHPEKCVCKEKVL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.1
55.4
40.1
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
72.3
0.5
1
66.6
40.6
Minor 5ss
30.3
-2.3
3.5
42.7
44.4
Minor BPS
56.7
0.21
1.9
72.2
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013935
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014519
20665017 - 20712332
47316