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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20669512_20670351_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20669512 - 20670351
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAGAAG
5'SS Class:
major
3'SS Sequence:
TATTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTGTTCTAACC
Flanking Amino Acid:
CDQHTGNCFNGYDNEPFFNI
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
62.9
43.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.2
0.75
0.8
74.2
36.2
Minor 5ss
30.5
-2.2
3.1
30.7
43
Minor BPS
53.7
0.09
1.8
67.01
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013935
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014519
20665017 - 20712332
47316