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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20679092_20692871_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20679092 - 20692871
Intron Length:
13780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGCTTGTAACT
Flanking Amino Acid:
ANRTGDMENVVHGKCVCRHN
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.6
0.82
0.7
80.8
24.7
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
50.3
0.09
2
70.84
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013935
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014519
20665017 - 20712332
47316