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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20705588_20712265_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20705588 - 20712265
Intron Length:
6678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTAGCTTTATTT
Flanking Amino Acid:
EYFISGHGGADPMRLQAFRC
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
76.6
0.6
0.9
72.5
37.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
59.9
0.39
1.7
76.15
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013935
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014519
20665017 - 20712332
47316