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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20715566_20722326_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20715566 - 20722326
Intron Length:
6761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTGG
5'SS Class:
major
3'SS Sequence:
CTCTTCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTTTACCTAATT
Flanking Amino Acid:
TPNLTAQEKKLALRNALRYF
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
61.3
45.8
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
76
0.58
0.9
72.7
32.1
Minor 5ss
41.7
-0.9
3.2
55.9
48.3
Minor BPS
68.4
0.66
1.8
90.03
33.7

Associated Gene:

Gene:
UROC1
Ensembl Gene ID:
ENSAPLG00000013109
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013679
20715440 - 20754387
38948