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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20733752_20734199_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20733752 - 20734199
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTCAACC
Flanking Amino Acid:
NNLDHCIARLRDARKNKIAL
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.7
0.51
0.9
63.9
41.8
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
78.1
0.86
1.4
86.68
30.5

Associated Gene:

Gene:
UROC1
Ensembl Gene ID:
ENSAPLG00000013109
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025611
20719290 - 20754387
35098