About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20734263_20735174_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20734263 - 20735174
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTATT
Flanking Amino Acid:
LGYHGNVVDLWERLVYELDT
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.7
0.62
0.7
70
31
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
62.9
0.49
1.9
83.69
36.7

Associated Gene:

Gene:
UROC1
Ensembl Gene ID:
ENSAPLG00000013109
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025611
20719290 - 20754387
35098
ENSAPLT00000013679
20715440 - 20754387
38948