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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20735355_20736783_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20735355 - 20736783
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CATTCTTTATTT
Flanking Amino Acid:
PGKFRTMVQESLRRHVAAIN
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
64.2
0.52
1.6
76.5
40.9

Associated Gene:

Gene:
UROC1
Ensembl Gene ID:
ENSAPLG00000013109
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013679
20715440 - 20754387
38948
ENSAPLT00000025611
20719290 - 20754387
35098