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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20759879_20760343_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20759879 - 20760343
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
CCAAGCTGATTT
Flanking Amino Acid:
PERPYRCDFPGCERTFITVS
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
60.8
45.3
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
85.2
0.79
0.7
84.2
23.7
Minor 5ss
30.6
-2.2
3.3
39.3
46
Minor BPS
40.1
-0.6
2
49.89
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013039
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013581
20758705 - 20768650
9946