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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20760497_20761580_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20760497 - 20761580
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCATA
5'SS Class:
major
3'SS Sequence:
TTCTTTGCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATTATTAATG
Flanking Amino Acid:
RLKIHMRSHTGERPFICDFE
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
72.5
38.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.5
0.55
1
79.2
33.2
Minor 5ss
49.1
-0.1
2.5
66.4
44.7
Minor BPS
59.7
0.17
1.6
63.57
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013039
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013581
20758705 - 20768650
9946