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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20761660_20761776_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20761660 - 20761776
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCTTCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CGGGTTTAATCT
Flanking Amino Acid:
TSMSKLLRHKRKHEDDRRFT
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
69.7
43.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.4
0.71
0.7
76.6
25.4
Minor 5ss
63.8
0.47
2.8
81.8
38.5
Minor BPS
41.3
-0.5
1.9
50.73
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013039
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013581
20758705 - 20768650
9946