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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20761908_20762837_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20761908 - 20762837
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTC
5'SS Class:
major
3'SS Sequence:
TATCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
CTTTCTGTATCT
Flanking Amino Acid:
GTKPFECPVEGCCAKFSARS
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
68.9
36.6
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
89.1
0.88
0.7
84.5
29.9
Minor 5ss
46.7
-0.3
3.2
66.9
44.7
Minor BPS
53.5
0.19
2.3
79.06
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013039
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013581
20758705 - 20768650
9946