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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20766008_20766876_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20766008 - 20766876
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCTGCCTTCACA
Flanking Amino Acid:
AQYVQIQLLQDDPSGEGDLP
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
78
0.63
0.8
71.8
32.8
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
64.7
0.46
1.9
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013039
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013581
20758705 - 20768650
9946