Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20766979_20768021_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20766979 - 20768021

Intron Length:

1043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAGCAT

5'SS Class:

major

3'SS Sequence:

TTTGCTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TTTGCTTTAACA

Flanking Amino Acid:

TVDLPVHILQEPHNSTEDDA

Intron Amino Acid Position:

919

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

62.9

43.2

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

0.7

0.9

77.2

35.8

Minor 5ss

30.4

-2.2

3.7

46.2

49.1

Minor BPS

81.5

0.98

1.2

86.93

31.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013039

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013581

20758705 - 20768650

9946