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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20778927_20779572_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20778927 - 20779572
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGGC
5'SS Class:
major
3'SS Sequence:
GGGTTCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTGCCTTTATG
Flanking Amino Acid:
NDRREIFLLEYAMAVKREEI
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
63.6
41.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
71.4
0.48
1
66.8
43.8
Minor 5ss
32
-2.1
3.3
44.5
43.3
Minor BPS
63.5
0.28
1.8
71.2
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012975
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013510
20778759 - 20782788
4030