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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20779629_20780198_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20779629 - 20780198
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAAC
5'SS Class:
major
3'SS Sequence:
GATTACCCACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TGTTTCAGATTA
Flanking Amino Acid:
CLSWKIAIKKEKETFRNYIN
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.1
37.5
Major BPS
74.1
0.6
1
69
38.9
Major PPT
58.5
0.19
1
49.6
39.9
Minor 5ss
25.7
-2.8
3.2
32.5
42.8
Minor BPS
46.1
-0.2
1.9
61.68
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012975
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013510
20778759 - 20782788
4030