About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20780392_20781455_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20780392 - 20781455
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GTCCGCATAACT
Flanking Amino Acid:
RDKERKKAKEEREKMKTMKI
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
73.6
0.53
0.7
68.9
24.8
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
49.6
0.05
2.1
71.33
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012975
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013510
20778759 - 20782788
4030