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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20811270_20816973_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20811270 - 20816973
Intron Length:
5704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTGTCTGAAAA
Flanking Amino Acid:
FACTWPGCGWRFSRSDELSR
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.9
0.78
0.7
80.4
24.8
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
59.8
0.31
1.7
73.17
38.4

Associated Gene:

Gene:
KLF15
Ensembl Gene ID:
ENSAPLG00000012971
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013498
20808954 - 20817142
8189