Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2091788_2109649_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2091788 - 2109649

Intron Length:

17862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGCGGC

5'SS Class:

major

3'SS Sequence:

TTTTCTCCTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTCAT

U12 Branch Point Sequence:

TGGTCATCCATT

Flanking Amino Acid:

IRAEMEQLKELSLQLEEGQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

58.1

Major BPS

69.7

0.49

1.3

71.4

45.1

Major PPT

0.81

0.6

82.1

22.6

Minor 5ss

29.8

-2.3

3.5

40.6

Minor BPS

45.5

-0.2

2.2

66.17

44.5

Associated Gene:

Gene:

BICD2

Ensembl Gene ID:

ENSAPLG00000015296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032594

2091527 - 2175391

83865

ENSAPLT00000022962

2091527 - 2176919

85393

ENSAPLT00000038274

2091527 - 2173803

82277