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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20951522_20957043_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20951522 - 20957043
Intron Length:
5522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TTCTCCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TCTTCTTTTGTT
Flanking Amino Acid:
AAGLLMDVVQHWAVFQTITE
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
59.7
0.24
1
67
29.8
Major PPT
81.3
0.7
0.7
73.8
31.3
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
43.8
-0.3
3.5
74.98
42.9

Associated Gene:

Gene:
SLC41A3
Ensembl Gene ID:
ENSAPLG00000012578
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013110
20951327 - 20969915
18589