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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20978241_20980680_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20978241 - 20980680
Intron Length:
2440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
TTTGGGTGAGCT
Flanking Amino Acid:
PLQALYESDQLEQSSLQAVH
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
41.1
-0.5
2.6
68.42
48.1

Associated Gene:

Gene:
CHST13
Ensembl Gene ID:
ENSAPLG00000012574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013085
20977395 - 21001286
23892