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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20980764_21001189_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20980764 - 21001189
Intron Length:
20426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTCG
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTCACTC
Flanking Amino Acid:
VFYLQSSLKPAAEDGAMRTA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
39.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.6
0.71
0.8
72.9
36.8
Minor 5ss
33.7
-1.9
3
40.8
45.6
Minor BPS
58.8
0.26
1.8
73.85
37.6

Associated Gene:

Gene:
CHST13
Ensembl Gene ID:
ENSAPLG00000012574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013085
20977395 - 21001286
23892