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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21072879_21073727_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21072879 - 21073727
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTATCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCTTGTTATCC
Flanking Amino Acid:
IEKYGKQNLEVYHSLFWPLE
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.4
0.57
0.9
66.1
40.7
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
50.6
-0
2.3
69.18
42.9

Associated Gene:

Gene:
TXNRD3
Ensembl Gene ID:
ENSAPLG00000011990
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012532
21070521 - 21082516
11996