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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21073836_21074033_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21073836 - 21074033
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAAATATAAACT
Flanking Amino Acid:
RRLYGGSSTKCDYINVPTTV
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.2
40.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
32.2
-2
3.7
45.9
49.3
Minor BPS
48.3
-0
1.9
67.91
42.2

Associated Gene:

Gene:
TXNRD3
Ensembl Gene ID:
ENSAPLG00000011990
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012532
21070521 - 21082516
11996