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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21075222_21075683_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21075222 - 21075683
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCATT
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TTGTGTAAAATT
Flanking Amino Acid:
PETFVGEYNTVLIAIGRDAC
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
75.1
40.8
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
85.6
0.8
0.7
84.8
29.7
Minor 5ss
48.2
-0.2
2.9
76.7
38.2
Minor BPS
45
-0.3
2.2
67.86
43.9

Associated Gene:

Gene:
TXNRD3
Ensembl Gene ID:
ENSAPLG00000011990
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012532
21070521 - 21082516
11996