About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21075777_21076002_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21075777 - 21076002
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATATTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATTCTAAGCT
Flanking Amino Acid:
TFIRKCIPTQVEKLEDGTPG
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.4
1.17
0.7
94.5
13
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.8
0.51
1
66.1
43.6
Minor 5ss
25
-2.9
4
41.3
45.2
Minor BPS
52.8
0.17
1.9
72
45

Associated Gene:

Gene:
TXNRD3
Ensembl Gene ID:
ENSAPLG00000011990
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012532
21070521 - 21082516
11996