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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21076229_21076332_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21076229 - 21076332
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TAACCTATACTT
Flanking Amino Acid:
IPGDKEYCITSDDLFSLPYC
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85.8
0.8
0.6
84.7
23
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
46.9
-0.1
1.8
64.45
39.9

Associated Gene:

Gene:
TXNRD3
Ensembl Gene ID:
ENSAPLG00000011990
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012532
21070521 - 21082516
11996