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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21203590_21212586_R

Intron Information:

Intron Rank:
146732
Intron Class:
major
Intron Phase:
Intron Coordinates:
21203590 - 21212586
Intron Length:
8997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGATGTTTGAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
45.5
-0.4
2.1
51.38
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026264
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043625
21202574 - 21212842
10269