Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21297112_21311559_R

Intron Information:

Intron Rank:

154397

Intron Class:

major

Intron Phase:

Intron Coordinates:

21297112 - 21311559

Intron Length:

14448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTACTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAC

U12 Branch Point Sequence:

TTCTCTTTACTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

76.2

39.9

Major BPS

0.6

65.6

41.1

Major PPT

83.7

0.76

0.8

77.9

30.7

Minor 5ss

35.9

-1.6

3.3

40.9

45.3

Minor BPS

65.9

0.48

1.6

73.34

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020310

21295130 - 21311696

16567