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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21327675_21330070_F

Intron Information:

Intron Rank:
131286
Intron Class:
major
Intron Phase:
Intron Coordinates:
21327675 - 21330070
Intron Length:
2396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCATCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCCTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.1
0.66
0.8
77.1
30
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
70.8
0.64
1.7
79.01
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020520
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025861
21326712 - 21330074
3363