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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21327675_21346718_F

Intron Information:

Intron Rank:
131292
Intron Class:
major
Intron Phase:
Intron Coordinates:
21327675 - 21346718
Intron Length:
19044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCATCTATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATACTTAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
80
0.75
1
78.6
31
Major PPT
74.5
0.55
0.9
68.5
36.3
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
60.6
0.33
1.8
71.16
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020520
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035628
21327313 - 21347700
20388