Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21358008_21380682_F

Intron Information:

Intron Rank:

131289

Intron Class:

major

Intron Phase:

Intron Coordinates:

21358008 - 21380682

Intron Length:

22675

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAGGTTTC

5'SS Class:

major

3'SS Sequence:

CCCTTACTACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTCCCTTACTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

1.1

73.2

39.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

70.2

0.45

0.9

62.6

37.5

Minor 5ss

42.9

-0.8

3.1

52.3

Minor BPS

66.5

0.51

1.6

75.28

36.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020520

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032566

21357274 - 21391554

34281