About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21390470_21391001_F

Intron Information:

Intron Rank:
131285
Intron Class:
major
Intron Phase:
Intron Coordinates:
21390470 - 21391001
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGCAGT
5'SS Class:
major
3'SS Sequence:
TCTCCTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTCCTTCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
64
47.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.7
0.6
0.7
72.3
26
Minor 5ss
40.2
-1.1
3.3
57.5
46.9
Minor BPS
47.2
-0.2
1.9
60.42
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020520
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019477
21388587 - 21391554
2968