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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21436119_21440659_R

Intron Information:

Intron Rank:
135825
Intron Class:
major
Intron Phase:
Intron Coordinates:
21436119 - 21440659
Intron Length:
4541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.3
0.88
0.6
83.8
24.5
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
55.6
0.04
1.8
65.72
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020480
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027244
21433756 - 21449984
16229
ENSAPLT00000018123
21433756 - 21440721
6966