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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21440899_21449491_R

Intron Information:

Intron Rank:
135827
Intron Class:
major
Intron Phase:
Intron Coordinates:
21440899 - 21449491
Intron Length:
8593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020480
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027244
21433756 - 21449984
16229