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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21453389_21464323_R

Intron Information:

Intron Rank:
135831
Intron Class:
major
Intron Phase:
Intron Coordinates:
21453389 - 21464323
Intron Length:
10935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTACAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
70.5
0.46
0.8
61.3
35
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
47.9
-0
1.9
66.49
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020480
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041177
21453376 - 21480682
27307