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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21477449_21480342_R

Intron Information:

Intron Rank:
135830
Intron Class:
major
Intron Phase:
Intron Coordinates:
21477449 - 21480342
Intron Length:
2894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
87.8
0.85
0.6
84.9
22.8
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020480
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045210
21473693 - 21480682
6990
ENSAPLT00000041177
21453376 - 21480682
27307
ENSAPLT00000032333
21449625 - 21480682
31058