About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21502034_21505682_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21502034 - 21505682
Intron Length:
3649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTCTCCTGCCT
Flanking Amino Acid:
DIPNYKSWVERYYADIAKMP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.6
0.73
0.7
76.6
25.4
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
41.7
-0.5
3.6
77.12
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022758
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030262
21501126 - 21509636
8511