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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21505896_21507625_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21505896 - 21507625
Intron Length:
1730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGGAG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGGTGCTGACTC
Flanking Amino Acid:
YDVRHTWKSNCLPLRFWVNV
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
58.5
40.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
28.8
-2.4
3.5
34.2
43.1
Minor BPS
42.5
-0.5
2
48.45
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022758
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030262
21501126 - 21509636
8511